Infrastructure for ordering objects with an implementation of several seriation/sequencing/ordination techniques to reorder matrices, dissimilarity matrices, and dendrograms. Also provides (optimally) reordered heatmaps, color images and clustering visualizations like dissimilarity plots, and visual assessment of cluster tendency plots (VAT and iVAT). Hahsler et al (2008) <doi:10.18637/jss.v025.i03>.
Version: 1.5.7 Depends: R (≥ 2.14.0) Imports: ca, cluster, colorspace, foreach, gclus, grDevices, grid, MASS, qap, registry, stats, TSP, vegan Suggests: dbscan, DendSer, dendextend, doParallel, GA, ggplot2, keras, Rtsne, scales, smacof, tensorflow, testthat, umap Published: 2024-12-05 DOI: 10.32614/CRAN.package.seriation Author: Michael Hahsler [aut, cre, cph], Christian Buchta [aut, cph], Kurt Hornik [aut, cph], David Barnett [ctb], Michael Brusco [ctb, cph], Michael Friendly [ctb], Hans-Friedrich Koehn [ctb, cph], Fionn Murtagh [ctb, cph], Stephanie Stahl [ctb, cph] Maintainer: Michael Hahsler <mhahsler at lyle.smu.edu> BugReports: https://github.com/mhahsler/seriation/issues License: GPL-3 Copyright: The code in src/bbwrcg.f, src/arsa.f and src/bburcg.f are Copyright (C) 2005 M. Brusco, H.F. Koehn, and S. Stahl. All other code is Copyright (C) Michael Hahsler, Christian Buchta, and Kurt Hornik. URL: https://github.com/mhahsler/seriation NeedsCompilation: yes Classification/ACM: G.1.6, G.2.1, G.4 Citation: seriation citation info Materials: README, NEWS In views: Cluster CRAN checks: seriation results Documentation: Downloads: Reverse dependencies: Reverse depends: adepro, DendSer, elaborator, NetSAM Reverse imports: arulesViz, baizer, corrr, GAPR, HarmonizR, heatmaply, MEDseq, methylscaper, RMaCzek, sechm, treeheatr Reverse suggests: ChemoSpec, corrgram, corrplot, dendextend, dendsort, disclapmix, flexclust, ggraph, ockc, protti, SFS, tidygraph, vcdExtra Reverse enhances: relations Linking:Please use the canonical form https://CRAN.R-project.org/package=seriation to link to this page.
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