Creates complex heatmaps for single cell RNA-seq data that simultaneously display gene expression levels (as color intensity) and expression percentages (as circle sizes). Supports gene grouping, cell type annotations, and time point comparisons. Built on top of 'ComplexHeatmap' and integrates with 'Seurat' objects. For more details see Gu (2022) <doi:10.1002/imt2.43> and Hao (2024) <doi:10.1038/s41587-023-01767-y>.
Version: 0.1.2 Depends: R (≥ 4.0.0) Imports: ComplexHeatmap (≥ 2.10.0), Seurat (≥ 4.0.0), dplyr (≥ 1.0.0), tidyr (≥ 1.0.0), RColorBrewer, circlize (≥ 0.4.0), grid, grDevices, stats, magrittr Suggests: testthat (≥ 3.0.0), knitr, rmarkdown, viridis, devtools, BiocManager, ggsci, SeuratObject Published: 2025-06-28 DOI: 10.32614/CRAN.package.SingleCellComplexHeatMap Author: XueCheng Fang [aut, cre] Maintainer: XueCheng Fang <xuecheng328 at gmail.com> BugReports: https://github.com/FanXuRong/SingleCellComplexHeatMap/issues License: MIT + file LICENSE URL: https://github.com/FanXuRong/SingleCellComplexHeatMap NeedsCompilation: no Materials: README CRAN checks: SingleCellComplexHeatMap results Documentation: Downloads: Linking:Please use the canonical form https://CRAN.R-project.org/package=SingleCellComplexHeatMap to link to this page.
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