A versatile R visualization package that empowers researchers with comprehensive visualization tools for seamlessly mapping peptides to protein sequences, identifying distinct domains and regions of interest, accentuating mutations, and highlighting post-translational modifications, all while enabling comparisons across diverse experimental conditions. Potential applications of 'PepMapViz' include the visualization of cross-software mass spectrometry results at the peptide level for specific protein and domain details in a linearized format and post-translational modification coverage across different experimental conditions; unraveling insights into disease mechanisms. It also enables visualization of Major histocompatibility complex-presented peptide clusters in different antibody regions predicting immunogenicity in antibody drug development.
Version: 1.1.0 Imports: shiny, ggplot2, stringr, ggforce, ggh4x, ggnewscale, data.table, rlang, DT Suggests: knitr, rmarkdown, testthat (≥ 3.0.0), mzID, MSnbase Published: 2025-06-25 DOI: 10.32614/CRAN.package.PepMapViz Author: Zhenru Zhou [aut, cre], Qui Phung [aut], Corey Bakalarski [aut] Maintainer: Zhenru Zhou <zhou.zhenru at gene.com> License: MIT + file LICENSE NeedsCompilation: no Materials: README CRAN checks: PepMapViz results Documentation: Downloads: Linking:Please use the canonical form https://CRAN.R-project.org/package=PepMapViz to link to this page.
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