Eco-phylogenetic and community phylogenetic analyses. Keeps community ecological and phylogenetic data matched up and comparable using 'comparative.comm' objects. Wrappers for common community phylogenetic indices ('pez.shape', 'pez.evenness', 'pez.dispersion', and 'pez.dissimilarity' metrics). Implementation of Cavender-Bares (2004) correlation of phylogenetic and ecological matrices ('fingerprint.regression'). Phylogenetic Generalised Linear Mixed Models (PGLMMs; 'pglmm') following Ives & Helmus (2011) and Rafferty & Ives (2013). Simulation of null assemblages, traits, and phylogenies ('scape', 'sim.meta.comm').
Version: 1.2-4 Depends: ape (≥ 3.1-4) Imports: caper (≥ 0.5-2), picante (≥ 1.6-2), quantreg (≥ 5.05), mvtnorm (≥ 1.0-0), vegan (≥ 2.0-10), ade4 (≥ 1.6-2), FD (≥ 1.0-12), Matrix (≥ 1.1-4), methods (≥ 3.1.0), animation (≥ 2.4-0), phytools (≥ 0.6-60) Suggests: knitr (≥ 1.6), lme4 (≥ 1.1-7), formatR (≥ 1.7) Published: 2022-08-31 DOI: 10.32614/CRAN.package.pez Author: William D. Pearse, Marc W. Cadotte, Jeannine Cavender-Bares, Anthony R. Ives, Caroline Tucker, Steve C. Walker, Matthew R. Helmus Maintainer: William D. Pearse <will.pearse at gmail.com> License: GPL-3 NeedsCompilation: no Citation: pez citation info Materials: NEWS In views: MixedModels CRAN checks: pez results Documentation: Downloads: Reverse dependencies: Linking:Please use the canonical form https://CRAN.R-project.org/package=pez to link to this page.
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