Application of 'RaceID' allows inference of cell types and prediction of lineage trees by the 'StemID2' algorithm (Herman, J.S., Sagar, Grun D. (2018) <doi:10.1038/nmeth.4662>). 'VarID2' is part of this package and allows quantification of biological gene expression noise at single-cell resolution (Rosales-Alvarez, R.E., Rettkowski, J., Herman, J.S., Dumbovic, G., Cabezas-Wallscheid, N., Grun, D. (2023) <doi:10.1186/s13059-023-02974-1>).
Version: 0.3.9 Depends: R (≥ 3.5.0) Imports: coop, compiler, cluster, FateID, FNN, fpc, ggplot2, grDevices, harmony, ica, igraph, irlba, leiden, locfit, methods, MASS, Matrix, matrixStats, parallel, pheatmap, princurve, quadprog, randomForest, runner, Rcpp, RColorBrewer, Rtsne, umap, vegan LinkingTo: Rcpp (≥ 0.11.0) Suggests: batchelor, DESeq2, knitr, rmarkdown, SingleCellExperiment, slingshot, SummarizedExperiment Published: 2024-11-24 DOI: 10.32614/CRAN.package.RaceID Author: Dominic Grün [aut, cre] Maintainer: Dominic Grün <dominic.gruen at gmail.com> License: GPL-3 NeedsCompilation: yes SystemRequirements: C++17 CRAN checks: RaceID results Documentation: Downloads: Linking:Please use the canonical form https://CRAN.R-project.org/package=RaceID to link to this page.
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