Traditional methods for analyzing single cell RNA-seq datasets focus solely on gene expression, but this package introduces a novel approach that goes beyond this limitation. Using Gene Ontology terms as features, the package allows for the functional profile of cell populations, and comparison within and between datasets from the same or different species. Our approach enables the discovery of previously unrecognized functional similarities and differences between cell types and has demonstrated success in identifying cell types' functional correspondence even between evolutionarily distant species.
Version: 0.2.1 Depends: R (≥ 2.10) Imports: limma, Seurat (≥ 5.0.0), biomaRt, dplyr, magrittr, stats, tibble, tidyr, Matrix, utils, networkD3, slanter Suggests: knitr, devtools, pheatmap, rmarkdown, httr Published: 2024-01-24 DOI: 10.32614/CRAN.package.scGOclust Author: Yuyao Song [aut, cre, ctb], Irene Papatheodorou [aut, ths] Maintainer: Yuyao Song <ysong at ebi.ac.uk> BugReports: https://github.com/Papatheodorou-Group/scGOclust/issues License: GPL (≥ 3) URL: https://github.com/Papatheodorou-Group/scGOclust NeedsCompilation: no Materials: README CRAN checks: scGOclust results Documentation: Downloads: Linking:Please use the canonical form https://CRAN.R-project.org/package=scGOclust to link to this page.
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