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CRAN: Package phyloseqGraphTest

phyloseqGraphTest: Graph-Based Permutation Tests for Microbiome Data

Provides functions for graph-based multiple-sample testing and visualization of microbiome data, in particular data stored in 'phyloseq' objects. The tests are based on those described in Friedman and Rafsky (1979) <http://www.jstor.org/stable/2958919>, and the tests are described in more detail in Callahan et al. (2016) <doi:10.12688/f1000research.8986.1>.

Version: 0.1.1 Depends: R (≥ 3.5.0), ggplot2 (≥ 2.2.1), phyloseq (≥ 1.24.0) Imports: ggnetwork (≥ 0.5.1), igraph (≥ 1.1.2) Suggests: knitr, rmarkdown Published: 2024-02-05 DOI: 10.32614/CRAN.package.phyloseqGraphTest Author: Julia Fukuyama [aut, cre] Maintainer: Julia Fukuyama <julia.fukuyama at gmail.com> License: CC0 URL: https://github.com/jfukuyama/phyloseqGraphTest NeedsCompilation: no CRAN checks: phyloseqGraphTest results Documentation: Reference manual: phyloseqGraphTest.pdf Vignettes: Graph Testing Vignette
Downloads: Package source: phyloseqGraphTest_0.1.1.tar.gz Windows binaries: r-devel: phyloseqGraphTest_0.1.1.zip, r-release: phyloseqGraphTest_0.1.1.zip, r-oldrel: phyloseqGraphTest_0.1.1.zip macOS binaries: r-release (arm64): phyloseqGraphTest_0.1.1.tgz, r-oldrel (arm64): phyloseqGraphTest_0.1.1.tgz, r-release (x86_64): phyloseqGraphTest_0.1.1.tgz, r-oldrel (x86_64): phyloseqGraphTest_0.1.1.tgz Old sources: phyloseqGraphTest archive Reverse dependencies: Reverse suggests: MiscMetabar, pctax Linking:

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