The Cauchy Process can model pulsed continuous trait evolution on phylogenies. The likelihood is tractable, and is used for parameter inference and ancestral trait reconstruction. See Bastide and Didier (2023) <doi:10.1093/sysbio/syad053>.
Version: 1.0.3 Depends: R (≥ 3.5), ape (≥ 5.5) Imports: methods, robustbase, phylolm (≥ 2.6.5), nloptr, pracma, foreach, doParallel, HDInterval Suggests: covr, knitr, rmarkdown, spelling, geiger, testthat (≥ 3.0.0) Published: 2024-10-01 DOI: 10.32614/CRAN.package.cauphy Author: Gilles Didier [aut, cph], Paul Bastide [aut, cre] Maintainer: Paul Bastide <paul.bastide at cnrs.fr> BugReports: https://github.com/gilles-didier/cauphy/issues License: GPL (≥ 3) URL: https://gilles-didier.github.io/cauphy/ NeedsCompilation: yes Language: en-US Citation: cauphy citation info Materials: README NEWS CRAN checks: cauphy results Documentation: Downloads: Linking:Please use the canonical form https://CRAN.R-project.org/package=cauphy to link to this page.
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