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Bioconductor - BiocParallel (development version)

BiocParallel

This is the development version of BiocParallel; for the stable release version, see BiocParallel.

Bioconductor facilities for parallel evaluation

Bioconductor version: Development (3.22)

This package provides modified versions and novel implementation of functions for parallel evaluation, tailored to use with Bioconductor objects.

Author: Jiefei Wang [aut, cre], Martin Morgan [aut], Valerie Obenchain [aut], Michel Lang [aut], Ryan Thompson [aut], Nitesh Turaga [aut], Aaron Lun [ctb], Henrik Bengtsson [ctb], Madelyn Carlson [ctb] (Translated 'Random Numbers' vignette from Sweave to RMarkdown / HTML.), Phylis Atieno [ctb] (Translated 'Introduction to BiocParallel' vignette from Sweave to Rmarkdown / HTML.), Sergio Oller [ctb] (Improved bpmapply() efficiency., ORCID: ORCID: 0000-0002-8994-1549 )

Maintainer: Jiefei Wang <jiefei0804 at gmail.com>

Citation (from within R, enter citation("BiocParallel")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("BiocParallel")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("BiocParallel")
Details See More Suggests BiocGenerics, tools, foreach, BBmisc, doParallel, GenomicRanges, RNAseqData.HNRNPC.bam.chr14, TxDb.Hsapiens.UCSC.hg19.knownGene, VariantAnnotation, Rsamtools, GenomicAlignments, ShortRead, RUnit, BiocStyle, knitr, batchtools, data.table Linking To BH (>= 1.87.0), cpp11 Enhances Rmpi Depends On Me bacon, BEclear, Cardinal, CardinalIO, ChIPQC, ClassifyR, clusterSeq, consensusSeekeR, DEWSeq, DEXSeq, DMCFB, DMCHMM, doppelgangR, DSS, extraChIPs, FEAST, FRASER, GenomicFiles, hiReadsProcessor, INSPEcT, iPath, ISLET, matter, MBASED, metagene2, metapone, ncGTW, Oscope, OUTRIDER, PCAN, periodicDNA, pRoloc, RedisParam, Rqc, ShortRead, SigCheck, Spectra, sva, variancePartition, xcms, sequencing, OSCA.advanced, OSCA.workflows, SingleRBook Imports Me abseqR, ADImpute, AffiXcan, ALDEx2, AlphaBeta, AlpsNMR, amplican, ASICS, ATACseqQC, atena, atSNP, bambu, BANDITS, bandle, Banksy, BASiCS, batchelor, BayesSpace, bayNorm, beer, BERT, BioCor, BiocSingular, BioNERO, biotmle, biscuiteer, bluster, brendaDb, bsseq, CAGEfightR, CAGEr, CARDspa, ccImpute, CDI, cellbaseR, CellBench, CelliD, CellMixS, censcyt, Cepo, ChIPexoQual, chromVAR, ClusterFoldSimilarity, clustSIGNAL, CNVMetrics, CNVRanger, CoGAPS, comapr, coMethDMR, CompoundDb, concordexR, condiments, consensusDE, consensusOV, consICA, Coralysis, CoreGx, coseq, cpvSNP, CrispRVariants, crupR, csaw, CTSV, cydar, cypress, CytoGLMM, cytoKernel, cytomapper, CytoMDS, CytoPipeline, dcGSA, debCAM, decoupleR, DeepTarget, DegCre, DepInfeR, derfinder, DEScan2, DESeq2, DEsingle, DESpace, DiffBind, Dino, dmrseq, DNEA, DOSE, dreamlet, DRIMSeq, DropletUtils, Dune, easier, easyRNASeq, EMDomics, enhancerHomologSearch, epimutacions, epiregulon, epistasisGA, ERSSA, EWCE, factR, faers, fgsea, findIPs, FindIT2, FLAMES, flowcatchR, flowSpecs, GDCRNATools, gDNAx, gDRcore, gDRutils, GeDi, GENESIS, GenomAutomorphism, GenomicAlignments, gINTomics, GloScope, gmapR, gscreend, GSEABenchmarkeR, GSVA, h5vc, HicAggR, HiCBricks, HiCcompare, HiCDOC, HiCExperiment, HiContacts, HTSFilter, HybridExpress, iasva, icetea, ideal, IMAS, imcRtools, IntEREst, IONiseR, IPO, IsoformSwitchAnalyzeR, jazzPanda, katdetectr, KinSwingR, LimROTS, lisaClust, loci2path, LRcell, Macarron, magpie, magrene, mariner, mbkmeans, MCbiclust, MetaboAnnotation, MetaboCoreUtils, metabomxtr, metaseqR2, methodical, MethylAid, methylGSA, methyLImp2, methylInheritance, methylscaper, MetNet, mia, miaViz, microSTASIS, MICSQTL, miloR, minfi, MIRit, mist, mixOmics, MOGAMUN, MoleculeExperiment, monaLisa, motifbreakR, MotifPeeker, MPAC, MPRAnalyze, MsBackendMassbank, MsBackendMgf, MsBackendMsp, MsBackendRawFileReader, MsBackendSql, MSnbase, msqrob2, MsQuality, multiHiCcompare, mumosa, muscat, NBAMSeq, nnSVG, NPARC, ORFik, orthos, OVESEG, PAIRADISE, pairedGSEA, pathMED, PCAtools, PDATK, pengls, PharmacoGx, pipeComp, poem, pram, proActiv, profileplyr, ProteoDisco, PSMatch, qpgraph, QRscore, qsea, QuasR, RadioGx, raer, rawDiag, Rcwl, recount, ReducedExperiment, RegEnrich, REMP, RiboCrypt, RJMCMCNucleosomes, RNAmodR, RNAseqCovarImpute, ROTS, Rsamtools, RUVcorr, saseR, satuRn, scanMiR, scanMiRApp, SCArray, SCArray.sat, scater, scBubbletree, scClassify, scDblFinder, scDD, scDDboost, scde, scDesign3, SCFA, scFeatures, scHiCcompare, scHOT, scMerge, scMultiSim, SCnorm, scone, scoreInvHap, scPCA, scran, scRecover, screenCounter, scruff, scShapes, scTHI, scuttle, seqArchR, seqArchRplus, SEraster, sesame, SEtools, sigFeature, signatureSearch, SimBu, simpleSeg, SingleCellAlleleExperiment, SingleR, singscore, SNPhood, soGGi, spacexr, sparrow, SpatialFeatureExperiment, SpectralTAD, spicyR, splatter, SpliceWiz, SplicingGraphs, spoon, SpotSweeper, srnadiff, StabMap, Statial, SUITOR, SVP, syntenet, TAPseq, TBSignatureProfiler, ternarynet, TFBSTools, tidyCoverage, TMixClust, ToxicoGx, TPP2D, tpSVG, tradeSeq, TreeSummarizedExperiment, Trendy, TVTB, txcutr, UCell, VariantFiltering, VariantTools, VDJdive, velociraptor, vmrseq, Voyager, waddR, weitrix, xCell2, zinbwave, CytoMethIC, IHWpaper, JohnsonKinaseData, ExpHunterSuite, seqpac, causalBatch, DCLEAR, DTSEA, DysPIA, enviGCMS, GSEMA, Holomics, LDM, minSNPs, oosse, robin, scGate, spatialGE Suggests Me alabaster.mae, beachmat, BiocNeighbors, cliqueMS, DelayedArray, EpiCompare, escape, GenomicDataCommons, ggsc, glmGamPoi, GRaNIE, h5mread, HDF5Array, ISAnalytics, MungeSumstats, netSmooth, omicsPrint, plyinteractions, PureCN, randRotation, RcisTarget, rebook, rhdf5, S4Arrays, scGPS, SeqArray, spatialHeatmap, survClust, TFutils, TileDBArray, TrajectoryUtils, TSCAN, universalmotif, xcore, MethylAidData, Single.mTEC.Transcriptomes, TENxBrainData, TENxPBMCData, CAGEWorkflow, clustermq, conos, pagoda2, phase1RMD, RaMS, SpatialDDLS, survBootOutliers, wrTopDownFrag Links To Me Build Report Build Report Package Archives

Follow Installation instructions to use this package in your R session.


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