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Bioconductor - graph (development version)

graph

This is the development version of graph; for the stable release version, see graph.

graph: A package to handle graph data structures

Bioconductor version: Development (3.22)

A package that implements some simple graph handling capabilities.

Author: R Gentleman [aut], Elizabeth Whalen [aut], W Huber [aut], S Falcon [aut], Jeff Gentry [aut], Paul Shannon [aut], Halimat C. Atanda [ctb] (Converted 'MultiGraphClass' and 'GraphClass' vignettes from Sweave to RMarkdown / HTML.), Paul Villafuerte [ctb] (Converted vignettes from Sweave to RMarkdown / HTML.), Aliyu Atiku Mustapha [ctb] (Converted 'Graph' vignette from Sweave to RMarkdown / HTML.), Bioconductor Package Maintainer [cre]

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

Citation (from within R, enter citation("graph")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("graph")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("graph")

Details biocViews GraphAndNetwork, Software Version 1.87.0 In Bioconductor since BioC 1.6 (R-2.1) or earlier (> 20 years) License Artistic-2.0 Depends R (>= 2.10), methods, BiocGenerics(>= 0.13.11) Imports stats, stats4, utils System Requirements URL See More Suggests SparseM (>= 0.36), XML, RBGL, RUnit, cluster, BiocStyle, knitr Linking To Enhances Rgraphviz Depends On Me apComplex, biocGraph, BioMVCClass, BioNet, BLMA, CellNOptR, clipper, CNORfeeder, EnrichmentBrowser, GOstats, GraphAT, GSEABase, hypergraph, keggorthology, MineICA, pathRender, Pigengene, RbcBook1, RBGL, RCyjs, Rgraphviz, ROntoTools, SRAdb, topGO, vtpnet, DLBCL, SNAData, yeastExpData, cyjShiny, dlsem, graphpcor, gridGraphviz, PairViz, PerfMeas Imports Me AnnotationHubData, BgeeDB, BiocCheck, BiocFHIR, biocGraph, BiocPkgTools, biocViews, bnem, CAMERA, Category, categoryCompare, chimeraviz, ChIPpeakAnno, CHRONOS, consICA, CytoML, DEGraph, DEsubs, EnrichDO, epiNEM, EventPointer, fgga, flowClust, flowWorkspace, gage, GeneNetworkBuilder, GenomicInteractionNodes, GraphAT, graphite, hyperdraw, KEGGgraph, MIRit, mnem, MOSClip, NCIgraph, netresponse, OncoSimulR, ontoProc, openCyto, oposSOM, OrganismDbi, pathview, PhenStat, qpgraph, RCy3, RGraph2js, rsbml, SGCP, SplicingGraphs, Streamer, VariantFiltering, BioPlex, abn, BayesNetBP, BCDAG, BiDAG, BNrich, ceg, CePa, classGraph, clustNet, CodeDepends, cogmapr, ggm, gridDebug, HEMDAG, net4pg, netgsa, NetPreProc, pcalg, pcgen, rags2ridges, RANKS, RCPA, rsolr, rSpectral, SEMgraph, stablespec, topologyGSA, tpc, unifDAG, zenplots Suggests Me AnnotationDbi, DAPAR, DEGraph, EBcoexpress, ecolitk, gwascat, immApex, KEGGlincs, MLP, NetPathMiner, omXplore, rBiopaxParser, RCX, rTRM, S4Vectors, SPIA, VariantTools, arulesViz, bnlearn, bnstruct, bsub, ChoR, gbutils, GeneNet, gMCP, lava, loon, maGUI, netmeta, psych, rEMM, rPref, sisal, textplot, tidygraph Links To Me Build Report Build Report Package Archives

Follow Installation instructions to use this package in your R session.

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