This is the development version of wiggleplotr; for the stable release version, see wiggleplotr.
Make read coverage plots from BigWig filesBioconductor version: Development (3.22)
Tools to visualise read coverage from sequencing experiments together with genomic annotations (genes, transcripts, peaks). Introns of long transcripts can be rescaled to a fixed length for better visualisation of exonic read coverage.
Author: Kaur Alasoo [aut, cre]
Maintainer: Kaur Alasoo <kaur.alasoo at gmail.com>
Citation (from within R, entercitation("wiggleplotr")
): Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("wiggleplotr")
For older versions of R, please refer to the appropriate Bioconductor release.
DocumentationTo view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("wiggleplotr")
Details biocViews AlternativeSplicing, ChIPSeq, Coverage, GeneExpression, ImmunoOncology, RNASeq, Sequencing, Software, Transcription, Visualization Version 1.33.0 In Bioconductor since BioC 3.5 (R-3.4) (8 years) License Apache License 2.0 Depends R (>= 3.6) Imports dplyr, ggplot2 (>= 2.2.0), GenomicRanges, rtracklayer, cowplot, assertthat, purrr, S4Vectors, IRanges, GenomeInfoDb System Requirements URL See More Suggests knitr, rmarkdown, biomaRt, GenomicFeatures, testthat, ensembldb, EnsDb.Hsapiens.v86, org.Hs.eg.db, TxDb.Hsapiens.UCSC.hg38.knownGene, AnnotationDbi, AnnotationFilter Linking To Enhances Depends On Me Imports Me chevreulPlot, chevreulShiny, factR Suggests Me MARVEL Links To Me Build Report Build Report Package Archives
Follow Installation instructions to use this package in your R session.
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