A RetroSearch Logo

Home - News ( United States | United Kingdom | Italy | Germany ) - Football scores

Search Query:

Showing content from http://bioconductor.org/packages/devel/bioc/html/../../bioc/html/../../bioc/html/scmeth.html below:

Bioconductor - scmeth (development version)

scmeth

This is the development version of scmeth; for the stable release version, see scmeth.

Functions to conduct quality control analysis in methylation data

Bioconductor version: Development (3.22)

Functions to analyze methylation data can be found here. Some functions are relevant for single cell methylation data but most other functions can be used for any methylation data. Highlight of this workflow is the comprehensive quality control report.

Author: Divy Kangeyan <divyswar01 at g.harvard.edu>

Maintainer: Divy Kangeyan <divyswar01 at g.harvard.edu>

Citation (from within R, enter citation("scmeth")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("scmeth")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("scmeth")
Details biocViews DNAMethylation, ImmunoOncology, Preprocessing, QualityControl, SingleCell, Software Version 1.29.0 In Bioconductor since BioC 3.7 (R-3.5) (7 years) License GPL-2 Depends R (>= 3.5.0) Imports knitr, rmarkdown, bsseq, AnnotationHub, GenomicRanges, reshape2, stats, utils, BSgenome, DelayedArray(>= 0.5.15), annotatr, SummarizedExperiment(>= 1.5.6), GenomeInfoDb, Biostrings, DT, HDF5Array(>= 1.7.5) System Requirements URL Bug Reports https://github.com/aryeelab/scmeth/issues See More Package Archives

Follow Installation instructions to use this package in your R session.

RetroSearch is an open source project built by @garambo | Open a GitHub Issue

Search and Browse the WWW like it's 1997 | Search results from DuckDuckGo

HTML: 3.2 | Encoding: UTF-8 | Version: 0.7.4