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Bioconductor - rnaEditr (development version)

rnaEditr

This is the development version of rnaEditr; for the stable release version, see rnaEditr.

Statistical analysis of RNA editing sites and hyper-editing regions

Bioconductor version: Development (3.22)

RNAeditr analyzes site-specific RNA editing events, as well as hyper-editing regions. The editing frequencies can be tested against binary, continuous or survival outcomes. Multiple covariate variables as well as interaction effects can also be incorporated in the statistical models.

Author: Lanyu Zhang [aut, cre], Gabriel Odom [aut], Tiago Silva [aut], Lissette Gomez [aut], Lily Wang [aut]

Maintainer: Lanyu Zhang <jennyzly2016 at gmail.com>

Citation (from within R, enter citation("rnaEditr")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("rnaEditr")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("rnaEditr")
Details biocViews DimensionReduction, Epigenetics, FeatureExtraction, GeneTarget, RNASeq, Regression, Software, Survival Version 1.19.0 In Bioconductor since BioC 3.12 (R-4.0) (4.5 years) License GPL-3 Depends R (>= 4.0) Imports GenomicRanges, IRanges, BiocGenerics, GenomeInfoDb, bumphunter, S4Vectors, stats, survival, logistf, plyr, corrplot System Requirements URL https://github.com/TransBioInfoLab/rnaEditr Bug Reports https://github.com/TransBioInfoLab/rnaEditr/issues See More Package Archives

Follow Installation instructions to use this package in your R session.


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