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Bioconductor - netresponse (development version)

netresponse

This is the development version of netresponse; for the stable release version, see netresponse.

Functional Network Analysis

Bioconductor version: Development (3.22)

Algorithms for functional network analysis. Includes an implementation of a variational Dirichlet process Gaussian mixture model for nonparametric mixture modeling.

Author: Leo Lahti, Olli-Pekka Huovilainen, Antonio Gusmao and Juuso Parkkinen

Maintainer: Leo Lahti <leo.lahti at iki.fi>

Citation (from within R, enter citation("netresponse")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("netresponse")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("netresponse")
Details biocViews CellBiology, Clustering, DifferentialExpression, GeneExpression, Genetics, GraphAndNetwork, Microarray, Network, NetworkInference, Software, Transcription Version 1.69.0 In Bioconductor since BioC 2.7 (R-2.12) (14.5 years) License GPL (>=2) Depends R (>= 2.15.1), BiocStyle, Rgraphviz, rmarkdown, methods, minet, mclust, reshape2 Imports ggplot2, graph, igraph, parallel, plyr, qvalue, RColorBrewer System Requirements URL https://github.com/antagomir/netresponse Bug Reports https://github.com/antagomir/netresponse/issues See More Suggests knitr Linking To Enhances Depends On Me Imports Me Suggests Me Links To Me Build Report Build Report Package Archives

Follow Installation instructions to use this package in your R session.

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