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Bioconductor - flowClust (development version)

flowClust

This is the development version of flowClust; for the stable release version, see flowClust.

Clustering for Flow Cytometry

Bioconductor version: Development (3.22)

Robust model-based clustering using a t-mixture model with Box-Cox transformation. Note: users should have GSL installed. Windows users: 'consult the README file available in the inst directory of the source distribution for necessary configuration instructions'.

Author: Raphael Gottardo, Kenneth Lo <c.lo at stat.ubc.ca>, Greg Finak <greg at ozette.ai>

Maintainer: Greg Finak <greg at ozette.ai>, Mike Jiang <mike at ozette.ai>

Citation (from within R, enter citation("flowClust")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("flowClust")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("flowClust")
Robust Model-based Clustering of Flow Cytometry Data\\ The flowClust package HTML R Script Reference Manual PDF README Text NEWS Text Details See More Suggests testthat, flowWorkspace, flowWorkspaceData, knitr, rmarkdown, openCyto, flowStats(>= 4.7.1) Linking To Enhances Depends On Me Imports Me cyanoFilter, flowTrans, openCyto Suggests Me BiocGenerics, flowTime, segmenTier Links To Me Build Report Build Report Package Archives

Follow Installation instructions to use this package in your R session.

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