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Bioconductor - dStruct (development version)

dStruct

This is the development version of dStruct; for the stable release version, see dStruct.

Identifying differentially reactive regions from RNA structurome profiling data

Bioconductor version: Development (3.22)

dStruct identifies differentially reactive regions from RNA structurome profiling data. dStruct is compatible with a broad range of structurome profiling technologies, e.g., SHAPE-MaP, DMS-MaPseq, Structure-Seq, SHAPE-Seq, etc. See Choudhary et al., Genome Biology, 2019 for the underlying method.

Author: Krishna Choudhary [aut, cre] ORCID: 0000-0002-7966-1527 , Sharon Aviran [aut] ORCID: 0000-0003-1872-9820

Maintainer: Krishna Choudhary <kchoudhary at ucdavis.edu>

Citation (from within R, enter citation("dStruct")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("dStruct")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("dStruct")
Differential RNA structurome analysis using `dStruct` HTML R Script Reference Manual PDF NEWS Text Details biocViews Sequencing, Software, StatisticalMethod, StructuralPrediction Version 1.15.0 In Bioconductor since BioC 3.14 (R-4.1) (3.5 years) License GPL (>= 2) Depends R (>= 4.1) Imports zoo, ggplot2, purrr, reshape2, parallel, IRanges, S4Vectors, rlang, grDevices, stats, utils System Requirements URL https://github.com/dataMaster-Kris/dStruct Bug Reports https://github.com/dataMaster-Kris/dStruct/issues See More Package Archives

Follow Installation instructions to use this package in your R session.

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