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Bioconductor - VariantTools (development version)

VariantTools

This is the development version of VariantTools; for the stable release version, see VariantTools.

Tools for Exploratory Analysis of Variant Calls

Bioconductor version: Development (3.22)

Explore, diagnose, and compare variant calls using filters.

Author: Michael Lawrence, Jeremiah Degenhardt, Robert Gentleman

Maintainer: Michael Lawrence <michafla at gene.com>

Citation (from within R, enter citation("VariantTools")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("VariantTools")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("VariantTools")
Details biocViews GeneticVariability, Genetics, Sequencing, Software Version 1.51.0 In Bioconductor since BioC 2.11 (R-2.15) (13 years) License Artistic-2.0 Depends R (>= 3.5.0), S4Vectors(>= 0.17.33), IRanges(>= 2.13.12), GenomicRanges(>= 1.31.8), VariantAnnotation(>= 1.11.16), methods Imports Rsamtools(>= 1.31.2), BiocGenerics, Biostrings, parallel, GenomicFeatures(>= 1.31.3), Matrix, rtracklayer(>= 1.39.7), BiocParallel, GenomeInfoDb, BSgenome, Biobase System Requirements URL See More Package Archives

Follow Installation instructions to use this package in your R session.

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