This is the development version of TFEA.ChIP; for the stable release version, see TFEA.ChIP.
Analyze Transcription Factor EnrichmentBioconductor version: Development (3.22)
Package to analyze transcription factor enrichment in a gene set using data from ChIP-Seq experiments.
Author: Laura Puente-Santamaria [aut, cre], Yosra Berrouayel [aut, cre], Luis del Peso [aut]
Maintainer: Yosra Berrouayel <yosraberrouayel at gmail.com>
Citation (from within R, entercitation("TFEA.ChIP")): Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("TFEA.ChIP")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation Details biocViews ChIPSeq, ChipOnChip, GeneExpression, GeneRegulation, GeneSetEnrichment, ImmunoOncology, RNASeq, Sequencing, Software, Transcription, Transcriptomics Version 1.29.2 In Bioconductor since BioC 3.7 (R-3.5) (7.5 years) License Artistic-2.0 Depends R (>= 4.2.0) Imports GenomicRanges, IRanges, biomaRt, GenomicFeatures, GenomicRanges, grDevices, dplyr, stats, utils, R.utils, methods, org.Hs.eg.db, org.Mm.eg.db, rlang, ExperimentHub System Requirements URL https://github.com/LauraPS1/TFEA.ChIP Bug Reports https://github.com/LauraPS1/TFEA.ChIP/issues See More Suggests knitr, rmarkdown, S4Vectors, Seqinfo, meta, plotly, scales, tidyr, purrr, tibble, ggplot2, DESeq2, edgeR, limma, babelgene, BiocGenerics, ggrepel, rcompanion, TxDb.Hsapiens.UCSC.hg19.knownGene, TxDb.Hsapiens.UCSC.hg38.knownGene, AnnotationDbi, RColorBrewer, RUnit, testthat (>= 3.0.0) Linking To Enhances Depends On Me Imports Me Suggests Me Links To Me Build Report Build Report Package ArchivesFollow Installation instructions to use this package in your R session.
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