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Showing content from http://bioconductor.org/packages/devel/bioc/html/../../bioc/html/../../bioc/html/TCseq.html below:

Bioconductor - TCseq (development version)

TCseq

This is the development version of TCseq; for the stable release version, see TCseq.

Time course sequencing data analysis

Bioconductor version: Development (3.22)

Quantitative and differential analysis of epigenomic and transcriptomic time course sequencing data, clustering analysis and visualization of the temporal patterns of time course data.

Author: Mengjun Wu <minervajunjun at gmail.com>, Lei Gu <leigu at broadinstitute.org>

Maintainer: Mengjun Wu <minervajunjun at gmail.com>

Citation (from within R, enter citation("TCseq")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("TCseq")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("TCseq")
Details biocViews ChIPSeq, Clustering, DifferentialExpression, Epigenetics, RNASeq, Sequencing, Software, TimeCourse, Visualization Version 1.33.0 In Bioconductor since BioC 3.5 (R-3.4) (8 years) License GPL (>= 2) Depends R (>= 3.4) Imports edgeR, BiocGenerics, reshape2, GenomicRanges, IRanges, SummarizedExperiment, GenomicAlignments, Rsamtools, e1071, cluster, ggplot2, grid, grDevices, stats, utils, methods, locfit System Requirements URL See More Suggests testthat Linking To Enhances Depends On Me Imports Me Suggests Me Links To Me Build Report Build Report Package Archives

Follow Installation instructions to use this package in your R session.

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