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Bioconductor - MatrixRider (development version)

MatrixRider

This is the development version of MatrixRider; for the stable release version, see MatrixRider.

Obtain total affinity and occupancies for binding site matrices on a given sequence

Bioconductor version: Development (3.22)

Calculates a single number for a whole sequence that reflects the propensity of a DNA binding protein to interact with it. The DNA binding protein has to be described with a PFM matrix, for example gotten from Jaspar.

Author: Elena Grassi

Maintainer: Elena Grassi <grassi.e at gmail.com>

Citation (from within R, enter citation("MatrixRider")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("MatrixRider")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MatrixRider")
Details See More Package Archives

Follow Installation instructions to use this package in your R session.

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