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Bioconductor - DECIPHER (development version)

DECIPHER

This is the development version of DECIPHER; for the stable release version, see DECIPHER.

Tools for curating, analyzing, and manipulating biological sequences

Bioconductor version: Development (3.22)

A toolset for deciphering and managing biological sequences.

Author: Erik Wright

Maintainer: Erik Wright <eswright at pitt.edu>

Citation (from within R, enter citation("DECIPHER")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("DECIPHER")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("DECIPHER")
Details biocViews Alignment, Clustering, DataImport, GenePrediction, Genetics, ImmunoOncology, Microarray, Microbiome, QualityControl, Sequencing, Software, Visualization, WholeGenome, qPCR Version 3.5.0 In Bioconductor since BioC 2.9 (R-2.14) (13.5 years) License GPL-3 Depends R (>= 3.5.0), Biostrings(>= 2.59.1), stats Imports methods, DBI, S4Vectors, IRanges, XVector System Requirements URL http://DECIPHER.codes See More Suggests RSQLite (>= 1.1) Linking To Biostrings, S4Vectors, IRanges, XVector Enhances Depends On Me AssessORF, sangeranalyseR, SynExtend Imports Me mia, scifer, AssessORFData, copyseparator, ensembleTax, VIProDesign Suggests Me MicrobiotaProcess, microbial, MiscMetabar Links To Me Build Report Build Report Package Archives

Follow Installation instructions to use this package in your R session.

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