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Bioconductor - BiocCheck (development version)

BiocCheck

This is the development version of BiocCheck; for the stable release version, see BiocCheck.

Bioconductor-specific package checks

Bioconductor version: Development (3.22)

BiocCheck guides maintainers through Bioconductor best practicies. It runs Bioconductor-specific package checks by searching through package code, examples, and vignettes. Maintainers are required to address all errors, warnings, and most notes produced.

Author: Bioconductor Package Maintainer [aut], Lori Shepherd [aut], Daniel von Twisk [ctb], Kevin Rue [ctb], Marcel Ramos [aut, cre] ORCID: 0000-0002-3242-0582 , Leonardo Collado-Torres [ctb], Federico Marini [ctb]

Maintainer: Marcel Ramos <marcel.ramos at sph.cuny.edu>

Citation (from within R, enter citation("BiocCheck")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("BiocCheck")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("BiocCheck")
BiocCheck: Ensuring Bioconductor package guidelines HTML R Script Reference Manual PDF NEWS Text Details biocViews Infrastructure, Software Version 1.45.8 In Bioconductor since BioC 2.14 (R-3.1) (11 years) License Artistic-2.0 Depends R (>= 4.4.0) Imports BiocBaseUtils, BiocFileCache, BiocManager, biocViews, callr, cli, codetools, graph, httr2, knitr, methods, rvest, stringdist, tools, utils System Requirements URL https://github.com/Bioconductor/BiocCheck Bug Reports https://github.com/Bioconductor/BiocCheck/issues See More Suggests BiocStyle, devtools, gert, jsonlite, rmarkdown, tinytest, usethis Linking To Enhances Depends On Me Imports Me AnnotationHubData, gDRstyle, methodical Suggests Me GEOfastq, packFinder, preciseTAD, ReducedExperiment, SpectralTAD, HMP16SData, HMP2Data, scpdata, MainExistingDatasets Links To Me Build Report Build Report Package Archives

Follow Installation instructions to use this package in your R session.


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