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S3 Generic to return default GDC fields — default_fields • GenomicDataCommons

S3 Generic to return default GDC fields

default_fields(x)

# S3 method for class 'character'
default_fields(x)

# S3 method for class 'GDCQuery'
default_fields(x)

x

A character string ('cases','files','projects', 'annotations') or an subclass of GDCQuery.

a character vector of the default fields

• default_fields(character): character method

• default_fields(GDCQuery): GDCQuery method

default_fields('projects')
#>  [1] "dbgap_accession_number" "disease_type"           "intended_release_date" 
#>  [4] "name"                   "primary_site"           "project_autocomplete"  
#>  [7] "project_id"             "releasable"             "released"              
#> [10] "state"                 
projQuery = query('projects')
default_fields(projQuery)
#>  [1] "dbgap_accession_number" "disease_type"           "intended_release_date" 
#>  [4] "name"                   "primary_site"           "project_autocomplete"  
#>  [7] "project_id"             "releasable"             "released"              
#> [10] "state"                 

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